Monday 27 August 2018

Hammer and chisel: the top ten reasons why fossil hunting is so important

At a time when the constantly evolving world of consumer digital technology seems to echo the mega-budget, cutting-edge experiments of the LHC and LIGO, is there still room for such an old-fashioned, low-tech science as paleontology?

The answer is of course yes, and while non-experts might see little difference between its practice today and that of its Eighteenth and Nineteenth Century pioneers, contemporary paleontology does on occasion utilise MRI scanners among other sophisticated equipment. I've previously discussed the delights of fossil hunting as an easy way to involve children in science, yet the apparent simplicity of its core techniques mask the key role that paleontology still plays in evolutionary biology.

Since the days of Watson and Crick molecular biology has progressed in leaps and bounds, yet the contemporary proliferation of cheap DNA-testing kits and television shows devoted to gene-derived genealogy obscure just how tentatively some of their results should be accepted. The levels of accuracy quoted in non-specialist media is often far greater than what can actually be attained. For example, the data on British populations has so far failed to separate those with Danish Viking ancestry from descendants of earlier Anglo-Saxon immigration, leading to population estimates at odds with the archaeological evidence.


Here then is a list of ten reasons why fossil hunting will always be a relevant branch of science, able to supply information that cannot be supplied by other scientific disciplines:
  1. Locations. Although genetic evidence can show the broad sweeps connecting extant (and occasionally, recently-extinct) species, the details of where animals, plants or fungi evolved, migrated to - and when - relies on fossil evidence.
  2. Absolute dating. While gene analysis can be used to obtain the dates of a last common ancestor shared by contemporary species, the results are provisional at best for when certain key groups or features evolved. Thanks to radiometric dating from some fossiliferous locales, paleontologists are able to fill in the gaps in fossil-filled strata that don't have radioactive mineralogy.
  3. Initial versus canonical. Today we think of land-living tetrapods (i.e. amphibians, reptiles, mammals and birds) as having a maximum of five digits per limb. Although these are reduced in many species – as per horse's hooves – five is considered canonical. However, fossil evidence shows that early terrestrial vertebrates had up to eight digits on some or all of their limbs. We know genetic mutation adds extra digits, but this doesn't help reconstruct the polydactyly of ancestral species; only fossils provide confirmation.
  4. Extinct life. Without finding their fossils, we wouldn't know of even such long-lasting and multifarious groups as the dinosaurs: how could we guess about the existence of a parasaurolophus from looking at its closest extant cousins, such as penguins, pelicans or parrots? There are also many broken branches in the tree of life, with such large-scale dead-ends as the pre-Cambrian Ediacaran biota. These lost lifeforms teach us something about the nature of evolution yet leave no genetic evidence.
  5. Individual history. Genomes show the cellular state of an organism, but thanks to fossilised tooth wear, body wounds and stomach contents (including gastroliths) we have important insights into day-to-day events in the life of ancient animals. This has led to fairly detailed biographies of some creatures, prominent examples being Sue the T-Rex and Al the Allosaurus, their remains being comprehensive enough to identify various pathologies.
  6. Paleoecology. Coprolites (fossilised faeces), along with the casts of burrows, help build a detailed enviromental picture that zoology and molecular biology cannot provide. Sometimes the best source of vegetation data comes from coprolites containing plant matter, due to the differing circumstances of decomposition and mineralisation.
  7. External appearance. Thanks to likes of scanning electron microscopes, fossils of naturally mummified organisms or mineralised skin can offer details that are unlikely to be discovered by any other method. A good example that has emerged in the past two decades is the colour of feathered dinosaurs obtained from the shape of their melanosomes.
  8. Climate analysis. Geological investigation can provide ancient climate data but fossil evidence, such as the giant insects of the Carboniferous period, confirm the hypothesis. After all, dragonflies with seventy centimetre wingspans couldn't survive with today's level of atmospheric oxygen.
  9. Stratigraphy. Paleontology can help geologists trying to sequence an isolated section of folded stratigraphy that doesn't have radioactive mineralogy. By assessing the relative order of known fossil species, the laying down of the strata can be placed in the correct sequence.
  10. Evidence of evolution. Unlike the theories and complex equipment used in molecular biology, anyone without expert knowledge can visit fossils in museums or in situ. They offer a prominent resource as defence against religious fundamentalism, as their ubiquity makes them difficult to explain by alternative theories. The fact that species are never found in strata outside their era supports the scientific view of life's development rather than those found in religious texts (the Old Testament, for example, erroneously states that birds were created prior to all other land animals).
To date, no DNA has been found over about 800,000 years old. This means that many of the details of the history of life rely primarily on fossil evidence. It's therefore good to note that even in an age of high-tech science, the painstaking techniques of paleontology can shed light on biology in a way unobtainable by more recent examples of the scientific toolkit. Of course, the study is far from fool-proof: it is thought that only about ten percent of all species have ever come to light in fossil form, with the found examples heavily skewed in favour of shallow marine environments.

Nevertheless, paleontology is a discipline that constantly proves its immense value in expanding our knowledge of the past in a way no religious text could ever do. It may be easy to understand what fossils are, but they are assuredly worth their weight in gold: precious windows onto an unrecoverable past.

Monday 13 August 2018

Life on Mars? How accumulated evidence slowly leads to scientific advances

Although the history of science is often presented as a series of eureka moments, with a single scientist's brainstorm paving the way for a paradigm-shifting theory, the truth is usually rather less dramatic. A good example of the latter is the formulation of plate tectonics, with the meteorologist Alfred Wegener's continental drift being rejected by the geological orthodoxy for over thirty years. It was only with the accumulation of data from late 1950's onward that the mobility of Earth's crust slowly gained acceptance, thanks to the multiple strands of new evidence that supported it.

One topic that looks likely to increase in popularity amongst both public and biologists is the search for life on Mars. Last month's announcement of a lake deep beneath the southern polar ice cap is the latest piece of observational data that Mars might still have environments suitable for microbial life. This is just the latest in an increasing body of evidence that conditions may be still be capable of supporting life, long after the planet's biota-friendly heyday. However, the data hasn't always been so positive, having fluctuated in both directions over the past century or so. So what is the correspondence between positive results and the levels of research for life on Mars?

The planet's polar ice caps were first discovered in the late Seventeenth Century, which combined with the Earth-like duration of the Martian day implied the planet might be fairly similar to our own. This was followed a century later by observation of what appeared to be seasonal changes to surface features, leading to the understandable conclusion of Mars as a temperate, hospitable world covered with vegetation. Then another century on, an early use of spectroscopy erroneously described abundant water on Mars; although the mistake was later corrected, the near contemporary reporting of non-existent Martian canals led to soaring public interest and intense speculation. The French astronomer Camille Flammarion helped popularise Mars as a potentially inhabited world, paving the way for H.G. Wells' War of the Worlds and Edgar Rice Burroughs' John Carter series.

As astronomical technology improved and the planet's true environment became known (low temperatures, thin atmosphere and no canals), Mars' popularity waned. By the time of Mariner 4's 1965 fly-by, the arid, cratered and radiation-smothered surface it revealed only served to reinforce the notion of a lifeless desert; the geologically inactive world was long past its prime and any life still existing there probably wouldn't be visible without a microscope.

Despite this disappointing turnabout, NASA somehow managed to gain the funding to incorporate four biological experiments on the two Viking landers that arrived on Mars in 1976. Three of the experiments gave negative results while the fourth was inconclusive, most researchers hypothesising a geochemical rather than biological explanation for the outcome. After a decade and a half of continuous missions to Mars, this lack of positive results - accompanied by experimental cost overruns - probably contributed to a sixteen-year hiatus (excluding two Soviet attempts at missions to the Martian moons). Clearly, Mars' geology by itself was not enough to excite the interplanetary probe funding czars.

In the meantime, it was some distinctly Earth-bound research that reignited interested in Mars as a plausible source of life. The 1996 report that Martian meteorite ALH84001 contained features resembling fossilised (if extremely small) bacteria gained worldwide attention, even though the eventual conclusion repudiated this. Analysis of three other meteorites originating from Mars showed that complex organic chemistry, lava flows and moving water were common features of the planet's past, although they offered no more than tantalising hints that microbial life may have flourished, possibly billions of years ago.

Back on Mars, NASA's 1997 Pathfinder lander delivered the Sojourner rover. Although it appeared to be little more than a very expensive toy, managing a total distance in its operational lifetime of just one hundred metres, the proof of concept led to much larger and more sophisticated vehicles culminating in today’s Curiosity rover.

The plethora of Mars missions over the past two decades has delivered immense amounts of data, including that the planet used to have near-ideal conditions for microbial life - and still has a few types of environment that may be able to support miniscule extremophiles.

Together with research undertaken in Earth-bound simulators, the numerous Mars projects of the Twenty-first Century have to date swung the pendulum back in favour of a Martian biota. Here are a few prominent examples:

  • 2003 - atmospheric methane is discovered (the lack of active geology implying a biological rather than geochemical origin)
  • 2005 - atmospheric formaldehyde is detected (it could be a by-product of methane oxidation)
  • 2007 - silica-rich rocks, similar to hot springs, are found
  • 2010 - giant sinkholes are found (suitable as radiation-proof habitats)
  • 2011 - flowing brines and gypsum deposits discovered
  • 2012 - lichen survived for a month in the Mars Simulation Laboratory
  • 2013 - proof of ancient freshwater lakes and complex organic molecules, along with a long-lost magnetic field
  • 2014 - large-scale seasonal variation in methane, greater than usual if of geochemical origin
  • 2015 - Earth-based research successfully incubates methane-producing bacteria under Mars-like conditions
  • 2018 - a 20 kilometre across brine lake is found under the southern polar ice sheet

Although these facts accumulate into an impressive package in favour of Martian microbes, they should probably be treated as independent points, not as one combined argument. For as well as finding factors supporting microbial life, other research has produced opposing ones. For example, last year NASA found that a solar storm had temporarily doubled surface radiation levels, meaning that even dormant microbes would have to live over seven metres down in order to survive. We should also bear in mind that for some of each orbit, Mars veers outside our solar system's Goldilocks Zone and as such any native life would have its work cut out for it at aphelion.

A fleet of orbiters, landers, rovers and even a robotic helicopter are planned for further exploration in the next decade, so clearly the search for life on Mars is still deemed a worthwhile effort. Indeed, five more missions are scheduled for the next three years alone. Whether any will provide definitive proof is the big question, but conversely, how much of the surface - and sub-surface - would need to be thoroughly searched before concluding that Mars has either never had microscopic life or that it has long since become extinct?

What is apparent from all this is that the quantity of Mars-based missions has fluctuated according to confidence in the hypothesis. In other words, the more that data supports the existence of suitable habitats for microbes, the greater the amount of research to find them. In a world of limited resources, even such profoundly interesting questions as extra-terrestrial life appear to gain funding based on the probability of near-future success. If the next generation of missions fails to find traces of even extinct life, my bet would be a rapid and severe curtailing of probes to the red planet.

There is a caricature of the stages that scientific hypotheses go through, which can ironically best be described using religious terminology: they start as heresy; proceed to acceptance; and are then carved into stone as orthodoxy. Of course, unlike with religions, the vast majority of practitioners accept the new working theory once the data has passed a certain probability threshold, even if it totally negates an earlier one. During the first stage - and as the evidence starts to be favourable - more researchers may join the bandwagon, hoping to be the first to achieve success.

In this particular case, the expense and sophistication of the technology prohibits entries from all except a few key players such as NASA and ESA. It might seem obvious that in expensive, high-tech fields, there has to be a correlation between hypothesis-supporting facts and the amount of research. But this suggests a stumbling block for out-of-the-box thinking, as revolutionary hypotheses fail to gain funding without at least some supporting evidence.

Therefore does the cutting-edge, at least in areas that require expensive experimental confirmation, start life as a chicken-and-egg situation? Until data providentially appears, is it often the case that the powers-that-be have little enticement for funding left-field projects? That certainly seems to have been true for meteorologist Alfred Wegener and his continental drift hypothesis, since it took several research streams to codify plate tectonics as the revolutionary solution. 

Back to Martian microbes. Having now read in greater depth about seasonal methane, it appears that the periodicity could be due to temperature-related atmospheric changes. This only leaves the scale of variation as support for a biological rather than geochemical origin. Having said that, the joint ESA/Roscosmos ExoMars Trace Gas Orbiter may find a definitive answer as to its source in the next year or so, although even a negative result is unlikely to close the matter for some time to come. Surely this has got to be one of the great what-ifs of our time? Happy hunting, Mars mission teams!