Ocean acidification: climate change at the sour end

A few weeks ago, I overheard a 58 year old man telling a 12 year old boy that the most dire of scientists' warnings concerning global warming over the past 30 years had failed to materialise - and that what the boy needed to learn was to be able to separate facts from propaganda.

Although it is no doubt next to impossible to be able to change such entrenched mindsets as those of this particular baby boomer, there is still extremely limited public understanding of the insidious changes currently taking place in our oceans. In addition to the rise in both sea temperature and sea level (approaching a centimetre every two-to-three years) a rapid increase in ocean acidity is now on course to profoundly disrupt marine life.

With the USA pulling out of the Paris Agreement, will the rest of world manage to pull together in order to prevent another tipping point? After all, increasing ocean acidification isn't something us non-marine scientists can directly observe. One key point that is immediately obvious is that it isn't a localised issue: as a third of atmospheric carbon dioxide is absorbed into the oceans, all the planet's seas will be affected. The decrease of 0.1pH unit in the past few centuries equates to an astonishing 26-29% increase in acidity. What's more, this change is predicted to have doubled by the end of this century. Clearly, the effect on marine life is set to be substantial.

So what is being done to assess the probable issues? Various projects around the world are using mesocosms - transparent cylinders up to ten metres long - to understand the effects of current and predicted near-future acidity levels on marine life. Coral bleaching is possibly the one condition people will have heard of (although there appear to be an astonishing number of people who think that coral is a plant rather than invertebrate animal) but sea temperature changes are as much a cause as increased acidity. Apart from causing stress to some marine organisms, leading to such conditions as lowered immune systems and so the spread of disease, acidification reduces the material available for shell and carapace formation, especially for juveniles and nauplii.

The problem isn't so much the change itself as the rate of change, which is far faster than normal geophysical processes. Indeed, one report states that over the past 20 million years, changes in oceanic acidification have been barely one percent of the current rate. Obviously, there is minimal chance of the non-directed mechanism of natural selection keeping pace with adaptations to the new conditions.

While many organisms will suffer, some such as jellyfish and toxic algae may benefit, with the latter leading to the poisoning of key fishing industry species. This in turn could lead to toxins entering the human food chain, on top of the economic issues from the decline in fish and shellfish stocks. Indeed, the US Pacific coast aquaculture industry is already experiencing a reduction in the shellfish populations. This will be in addition to the pollution of fresh waterways already explored in a post last year.

Of the various experiments aiming to understand the impact of the rapid increase, the largest project is the pan-European Biological Impacts of Ocean Acidification (BIOACID) scheme. Giant mesocosms sunk in a Swedish fjord have been sealed with local ocean water (and associated organisms) and half of them modified with the projected pH level.

Similar but small projects are underway in New Zealand and the Canary Islands, with preservation of edible stocks a key priority. Another problem with a decline in shellfish species destined for human consumption would be the loss of the raw material for chitosan, which may prove to be an ecologically-friendly replacement for plastic packaging.

Clearly, there could be numerous - and some as yet unknown - knock-on effects from the ocean acidification. Unlike the rise in atmospheric temperature, it is much more difficult to see the results of this fundamental change and for the public to understand the consequences. Yet again, the life forms affected are far from the cute poster species usually paraded to jump-start the public's environmental consciousness. Unfortunately, these may prove to be far more critical to the future of humanity and the wider world than say, giant pandas or Amur leopards. It's time for some serious sci-comm to spread the warning message!

Our feline friends - not so miaowvellous after all?

I've published a few posts concerning citizen science, from the active participation in conservation-orientated projects here in New Zealand to the more passive involvement in distributed computing projects that I briefly mentioned back in 2012.

A type of public involvement in scientific research half way between these examples has been developed to utilise the human ability to match up patterns, a skill which artificial intelligence is only just beginning to replicate. One early implementation of this was the Galaxy Zoo crowdsourced project, in which volunteers examining photographs taken by robotic, Earth-based telescopes to classify galaxies. Since 2009, the Zooniverse online portal has utilised more than one million volunteers to examine data on behalf of over fifty projects, many of which are within STEM disciplines.

Although initially often used for astronomy or astrophysics programmes, crowd sourcing platforms have latterly found an important role in conservation and biodiversity research. An example is the Smithsonian Institute-sponsored eMammal, which specialises in the examination of camera trap footage to identify the locations of animal species on a scale that could not obtained by other means.

In line with the outcome of the perhaps too ambitious Predator-free 2050 programme, one project that may require the assistance of the Zooniverse volunteers is analysis of feral cat DNA from New Zealand's Auckland Island. The DNA, derived partially from fecal matter (nice), is to discover what the cats on the island are eating. Although this research aims to discover the best way to remove invasive species from Auckland Island (cats are known to predate on native seabird species) there now appears to be another issue caused by cats living near coastlines.

Over the past fifteen years a body of evidence from around the world has shown that cats are directly responsible for the deaths of marine mammals. This might sound rather unlikely, but the microbial culprit, Toxoplasma gondii, is only found in the digestive system of cats. Both feral and domestic cats that catch and eat infected rodents or birds can acquire the parasite and pass it by their fecal matter into the wider environment via fresh water run-off or sewage outfalls. Eventually, it enters the marine food chain, reaching the apex in the former of cetaceans and pinnipeds among others.

Species such as sea otters, seals, and dolphins have been killed by toxoplasmosis, according to autopsies of specimens washed up on seashores as far apart as New Zealand and the USA. Increasing temperatures (thanks again, man-made climate change) and greater rainfall can spread toxoplasmosis even further. In addition to direct contamination from fecal matter, cat owners who flush cat litter down the toilet can also start the highly resilient microbes on a journey via sewer networks to the ocean. Among the New Zealand species proven to have been killed by infection are the critically endangered Maui dolphin and locally vulnerable Hector’s dolphin, so there is definitely a need for some prompt action.

It isn't just a case of the top marine predators eating infected fish or squid: sea mammals could swallow oocysts (basically, the protozoan equivalent of a fertilised egg) directly from water. Only now that Maui dolphins are falling victim to the parasite is the story of this deadly microbe becoming better known. Not incidentally, our species can also become ill with toxoplasmosis due to exposure to cat feces, with serious consequences for babies born to infected mothers and to people with compromised immune systems. In addition to the other potential dangers from the likes of Salmonella, Listeria and E. coli, the recent fad for 'raw' (i.e. unpasteurised) milk could lead to a far higher rate of toxoplasmosis in humans.

What can be done? Well, cat owners could stop flushing kitty litter down their toilets for a start. Is it a case that there are just too many cats in the world? Some recent reports claim that Homo sapiens and their domesticated species constitute 96% of the global mammal biomass. As for cat numbers, an estimate last year suggested that there are six hundred million pet cats and the same number of feral individuals worldwide.

Is this just too many? I admit that I'm fairly biased as it is: a few cat owners I know here in Auckland have pets that regularly kill skinks and it's only luck that these are invasive rainbow skinks rather than rare native species. When it comes to the likes of the last 55 Maui dolphins falling prey to a disease spread by an extremely common domesticated species, I'd rather be over-zealous than over-cautious in developing a solution. As far as I can see, the best control methods would be a vast reduction in cat numbers or the development of an innoculation for our feline friends that can kill the parasite. Somehow I doubt either course of action is likely, which means a far from purrfect method would be to educate cat owners as to how to minimise the spread of Toxoplasma gondii. So if you are a cat owner, or know of one, I guess this could be your time to shine...

Saving the oceans with chitosan: are prawns the new plastic?

Earlier in the year, I wrote a post concerning a new, extremely strong, material derived from limpet teeth. Bearing in mind our current reliance on oil-derived materials, another form of marine life may hold the key to the global plastic pollution crisis.

Every year over six million tons of crab, lobster and shrimp is processed as seafood. This industry's by-products include the chitin-rich carapaces of all these creatures. Chitin is a substance found in fungi and invertebrates, with a range of uses from making paper to food processing and biotech to water treatment. In the past five years, research has been gaining momentum for another use for chitin which may prove to be a game changer (and for once, this hyperbole could well prove an understatement).

Currently about 335 million tons of plastics are produced annually, of which one-third is for single (and therefore disposable) use. Only about twenty percent of the total is recycled. We have all seen news items about the Great Pacific Garbage Patch and the large numbers of wildlife species affected by ingesting such material. We are now also beginning to understand that we humans too are ingesting microplastic particles that contaminate our food chains, to the tune of forty to fifty thousand particles per person per year. Quite apart from the plastic itself, the unwanted materials in our food may contain absorbed chemicals and heavy metals known to be toxic. And that's separate to all the microplastic that rains down on us and our food from practically every manmade structure we enter.

In 2014 a biodegradable polymer was developed from chitosan, a material made by subjecting the chitinous carapaces of marine arthropods, primarily crustaceans, to a range of treatments. Chitosan has been in use for some decades in diverse fields such as medicine, as a biopesticide and as a filtration and clarification material. However, the acids used to produce it have markedly affected its green credentials. Over the past five years a rather more ecologically-friendly set of processing techniques, including ultrasonics and microwaves, have been developed. The upshot of this means that chitosan could eventuate into one of the most ubiquitous materials on the planet. Pioneering companies have been set up around the world to convert chitosan into biodegradable packaging.

One such corporation is the Scottish-based CuanTec, who are developing food packaging that is antimicrobial while also being compostable. They claim to be the first company able to use bacterial fermentation to extract chitin from langoustine shells on an industrial scale, which is subsequently processed into chitosan. The antimicrobial properties of the packaging means that the foodstuffs it contains will have a longer - possibly even doubled - shelf life, with protection against the likes of Salmonella, Listeria and E. coli.

The first three types of packaging are said to be a food film wrap, single-use milk bottles and beer can collators (the latter incidentally for a company who produce their alcohol from stale bread rolls!) However, to date CuanTec has sought crowd-funding in order to begin commercial operations, which seems astonishing. Their products are predicted to cost slightly more than the petro-chemical alternatives, but hopefully industry will realise that the advantages far outweigh this.

Across the Atlantic from CuanTec other companies are climbing on a similar bandwagon. Mari Signum in Virginia, USA, is utilising an ionised liquid (including vinegar) technique to extract chitin for the development of various products, including 3D-printed alternatives to plastic packaging. As a recognition of their efforts, last year the U.S. Environmental Protection Agency presented them with their Green Chemistry Challenge Award. They're not the only American company to investigate the potential of swapping plastics with chitosan: the California-based CruzFoam have expanded their research from chitin-derived surfboard cores to packaging aimed to replace polyurethane foam.

Universities in various nations are also working with chitin to produce bioplastics that combine with other materials such as cellulose. The National University of Singapore has combined grapefruit seed extract with chitosan to produce a composite film for use a food packaging which can extend the shelf life of perishables such as bread. In a nation as humid as Singapore, you can clearly see the savings to the consumer if such materials become commercially available - assuming the affected food producers don't buy up and block the relevant patents, that is!

Clearly, chitosan looks like a material whose time has come. Apart from the potentially vast reduction in plastics, the widespread use of chitosan-derived food packaging would likely lead to much less food being thrown away because it has spoiled. It's unlikely that chitosan manufacturers would run out of their raw material either, since chitin is the planet's second most abundant biopolymer - climate change effects on marine crustaceans not withstanding. I can't help but ponder just how many more natural substances are waiting their turn to be the next wonder material?

Why tiny organisms can be big news: three stories focused on the smaller scales of life

I've often mentioned how small-scale life is overlooked compared to the larger creatures we share this planet with. Three recent examples concern progressively smaller species and show both how little most people know about such organisms and how such apparently inconsequential life forms can effect our species.

The first example comes from Shropshire in the United Kingdom and occurred last month. A family in Telford came home from holiday to find that the fish in their ornamental tank had died. On cleaning the tank, the toxic fumes that emanated from it were so dangerous as to poison the family, leading to a stay in an isolation ward while their house was sealed off. The agent responsible for this none other than Zoanthid soft corals growing on a tank ornament, which turned out to be palytoxin, for which there is no antidote. Severe cases can lead to death from respiratory or cardiac failure, making it the second most poisonous non-protein substance.

Incidentally, none of the news reports stated if it was the toxin that killed the fish in the aquarium. What is most interesting about this story was that the family were reported as being unaware that the coral was alive, in addition to not receiving a warning from the store they bought the coral from.

I'm uncertain whether they meant that they didn't know that corals are animals rather than plants or whether they considered them as some type of mineral! Either way this sort of lack of fairly basic knowledge about the natural world always fills me with amazement, as I would have thought that a combination of primary school books and David Attenborough documentaries would have supplied this information to just about anyone in the UK today.

Leaving aside the obvious fact that nature is not a harmless mis-en-scene built for the enjoyment of mankind, this example shows just how dangerous even small-scale life can be; proof indeed that you don't have to travel to Australia to come into close contact with highly toxic species. Once gain, global warming may increase such encounters, as since the start of the twenty-first century, the Mediterranean has been experiencing mass poisonings due to algal blooms produced by a palytoxin derivative. Perhaps the moral here is better education before buying a pet!

If NASA's recent announcement of the 2025 Europa Clipper mission comes to fruition we will be one step closer to knowing if there are exotic forms of life in the ice-blanketed ocean of this moon of Jupiter. However, it is possible that our very own Moon might already be harbouring animals of an altogether more terrestrial nature.

The Israeli Beresheet lander crashed there in April this year but news reports have suggested that a few thousand passengers in the form of barely visible tardigrades (no more than 1.2 millimeters long) may have survived, albeit in a dehydrated form of hibernation. Able to survive in a tun state without water and in conditions of intense cold and heat - as well as a high vacuum - these water bears are only susceptible to ultraviolet flux.

Experiments conducted on the International Space Station prove that tardigrades can be rehydrated back to normal after exposure to the outer space environment. The probes demise appears to have been rather fast, so whether the water bears could survive the impact and sudden change in temperature and loss of atmosphere is doubtful. Most news stories seem to play the cuteness factor, with few mentioning that biological contamination of another body could be a breach of international law. Of course, the Moon's lack of atmosphere and liquid water mean any survivors are likely to remain in a tun state unless they can be retrieved in the future.

Tardigrade research may one day aid the development of long-duration space travel and human hibernation. What I'd really like to know about this story is that had Beresheet landed successfully, just what were the plans for the tardigrades anyway? None of the articles I read stated just what sort of scientific experiment they were the unwilling participants in. It's not like they would be able to phone home!

The third story concerns a life form whose individuals are microscopic but none the less important in terms of their environmental impact en masse. Back in 2004, the Waiau River in New Zealand's South Island was found to contain large masses of didymo, a type of freshwater diatom or single-celled algae not known to be native to the Southern Hemisphere, let alone the country. Individual
Didymosphenia geminata, colloquially called 'rock snot', might not be any more than one or two hundred microns long but they are capable of generating clumps and strands of mucus around a meter in size. Other South Island rivers were soon found to be equally contaminated, with other nations ranging from Canada to Chile finding similar proliferation.

What made this outbreak interesting is that algal blooms are usually due to an excess of nutrients entering fresh water sources, primarily from agricultural run-off. In the case of didymo it appears to be quite the opposite, with massive increases in mucus production being generated by a severe lack of phosphorus. Ironically, this means that attempts to reduce nutrient levels in the affected rivers might have only exacerbated the problem. As evidence in favour of this hypothesis, rivers tested in New Zealand's North Island have been shown to contain a combination of high phosphorus and dead didymo cells.

It hasn't even been established beyond doubt as to whether didymo has been accidentally introduced to New Zealand and elsewhere, or whether it has always been a minor, unobtrusive component of the ecosystem previously kept in check. While some environmental departments and organisations seem to prefer the former option - presumably as ammunition in the fight against invasive species - either origin still leads to potential degradation. Smaller insect species that congregate around rivers and streams, such as gnats and midges, tend to increase in numbers at the expense of larger ones such as caddisflies and mayflies. This in turn could have a knock-on effect on freshwater fish, crustacea, and probably wading birds too.

Financially-important human activities are also affected, from commercial fishing to hydroelectric schemes, but there appears to be no method of eradicating didymo without destroying other life in the same river. Therefore it may turn out that the only solution is to pollute rivers with phosphorus in order to keep the diatom population at a minimum!

This is far from the first time that I have discussed small-scale life but the issues raised by these three stories show yet again that we maintain traditional scale prejudice at our peril. Whether it is a single household experiencing (potentially fatal) poisoning to widespread changes in freshwater environments, we need better public education - and probably far more funding for international research - in order to minimise the problems generated at scales usually beneath our gaze. When it comes down to the crunch, such organisms have a far greater impact on the global ecosystem than all the endangered pandas, elephants and rhinos combined. As for those lunar tardigrades, I wonder how they are getting on..?

Anti-avian ingenuity: the numerous ways to minimise airport bird strikes

The widespread installation of wind turbines over the past three decades has generated a new ecologically unfriendly phenomenon, namely wild birds being killed by turbine sails. Although it could cause maintenance issues - and of course it's not good news for the birds themselves, the increasing density of air travel means far higher numbers of bird strikes are likely to occur in the much smaller turbines of jet engines, predominantly around airports.

I've previously written about how urban environments appear to generate wildlife somewhat smarter than rural equivalents. In contrast, airports seem to be a very poor choice for birds to inhabit, suggesting that the loss of natural environments coupled with the relatively undeveloped land around airport perimeters is causing birds to congregate in such precarious places.

It's somewhat ironic that such an environmentally unfriendly technology as air travel is inadvertently providing habitats for wild birds, but as urban sprawl increases animals are forced to live wherever they can find, even areas as seemingly unsuitable as runway taxiways and safety areas. As aircraft increase in size and speed but decrease in engine noise, it may be that aviation technology is contributing to the problem. In addition, waterfowl are attracted by the fresh water storage ponds found near runways for use in firefighting or drainage. Therefore, despite the noise, pollution, changes to local weather patterns and the obstacles in the form of the aircraft themselves, airports worldwide have found themselves becoming home to or visited by flocks of numerous bird species.

With over forty bird strikes every day, the cost to the global airline industry surpasses US$1 billion per year. So what is being done to reduce or remove this threat? The range of options is both ingenious and proof that birds are a formidable opponent, so here is a brief summary of popular methods:

1. Removing food and water sources
2. Audio repellents
3. Chemical repellents
4. Fake fire and pyrotechnics
5. Baited traps
6. Real and fake predators
7. Removing and culling birds

1) Reducing bird foodstuffs involves a variety of techniques that aren't exactly the height of eco-friendliness. Any vegetation that might be a food source for local bird species, such as fruit- or seed-bearing trees and bushes may be removed. One step further is to replace any grass areas with a non-local variety that is less attractive to native birds.

A substantially less environmentally-friendly approach has been the regular use of insecticides to remove food sources for insectivorous birds and even distributing poison to remove potential raptor prey such as rabbits. Open water storage ponds within airports have been netted to prevent waterfowl from landing on them, but camouflage has also been developed specifically to minimise the attractiveness of large bodies of water.

2) Some airports such as Singapore's Changi play bird distress and/or raptor calls to scare birds away. A less subtle method has been the regular discharge of loud sounds generated by sonic cannon such as propane exploders. However, evidence suggests that birds soon become accustomed to these.

3) As an antithesis to the removal of food sources described above, adding chemical repellents to airport vegetation is now being used. Since 2010, New Zealand airports have been using a a locally-developed grass, which contains an endophyte fungus that reduces insect numbers and makes birds sick. This may prove to be easier to implement than natural chemical repellents imported from agribusiness, such as methyl anthranilate and anthraquinone, which require sophisticated, ongoing and locally-tailored programmes to maintain effectiveness.

4) Although it might sound high-tech, the use of wind-blown metallic streamers that simulate fire have been found to only fool birds for short periods. Likewise, the use of lasers, flare launchers and other live pyrotechnic devices serve to acclimatise local wildfowl to sudden noise and light. After all, the birds are already congregating around noisy aircraft for much of the day!

5) For airports frequented by raptors, live prey such as pigeons can serve as bait for sophisticated traps that notify staff once they have been triggered. The problem then is where to release the bird of prey so that it doesn't return to the original area.

6) The opposite of the previous method is to swamp the locality with trained predators, from dogs to raptors, in order to convince birds to nest elsewhere. The predators don't have to always be live, either: in the USA, fake coyotes have been used in wetlands to keep birds away from flight paths.

7) If all other methods fail, there are several time-consuming alternatives that could be used as a last resort. Firstly, birds can be caught and moved to regions far from airports. Naturally, this requires collaboration with wildlife experts and/or rangers. As a guaranteed solution, culling may also be allowed, although this is hardly going to endear most people to a sector that, essential though it is, has a rather poor environmental record.

One potential smart solution for civilian aviation has been developed for the Royal Netherlands Air Force, which involves constant radar monitoring of wildfowl so that pilots can adjust their take-off and landing flight paths. Apart from lack of the technology at airports, each airport would need long-term trials to determine the appropriate adjustments with regard to local bird populations and their behaviour.

From what I've learnt while researching this issue, there is probably no single solution suitable for all airports; a suite of methods is required, tailored for each one depending on the local landscape, climate and of course bird species - the latter being wily and unpredictable adversaries. Clearly, there's a long way to go if such drastic solutions as culling the birds themselves and poisoning the wider ecosystem are seen as valid options. It looks as if more research is required before the danger to both airliners and birds can be reduced, although I doubt if it could ever be completely eliminated; nature is just too unpredictable!